ABOUT THIS RECORDspecies: Raphanus sativus var. oleiformis
miRNA family: MIRf351
source: miRNEST
Taxonomy by NCBI:
Raphanus sativus var. oleiformis Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTCTGGCTTGGTACTTTTGA miRNA* AGAGATACGCAAGCCGAAGAGC mismatches: 3 bulges: 1 |
pre-miRNA
GAAGTGGGTCGCAGAGATACGCAAGCCGAAGAGCAGATCACGTCTCTGGCTTGGTACTTTTGATACAGCCGA
dot-bracket secondary structure
......(((..(((((.(((.(((((((.(((..........))).)))))))))).))))).....)))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GAAGTGGGTCGCAGAGATACGCAAGCCGAAGAGCAGATCACGTCTCTGGCTTGGTACTTTTGATACAGCCGA
dot-bracket secondary structure
......(((..(((((.(((.(((((((.(((..........))).)))))))))).))))).....)))..
SIMILARITIES| miRBase no hits PMRD ath-miRf10708-akr: 0.0008 microPC no hits | UniProt sp|Q9M0J3|ERF54_ARATH: 0.000004 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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