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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000242
species: Brassica napus
miRNA family: MIRf419
source: miRNEST

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCCACAGCTTTSTTGAGCTTT

miRNA*
 AGTTCAAGAAAGCTGTGGAAA

mismatches: 2
bulges: 0
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pre-miRNA
 AACCCTGAATTGTCATGTTTTCCCACAGCTTTSTTGAGCTTTTTTTTTSTAGAGTGTTAAATGTTAGAGATTTTTAGTTATTTAATTTCGCTSTAAAATA
AGGGAAATGAAAAAGAAAGTTCAAGAAAGCTGTGGAAAAATATAACCAGGATCTTC

dot-bracket secondary structure
...((((....((.(((((((.((((((((((.((((((((((((((..(.(((((.((((.(((...))).))))..))))).(((((.((.((...))
.)))))))).)))))))))))))).)))))))))).))))))).))))))......


SIMILARITIES
miRBase bna-MIR396a: 4e-44

PMRD bna-miR396a: 4e-44

microPC miR396: 0.0000003		UniProt no hits

RFAM MIR396: 0.0000000000003		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
Source sequences
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