ABOUT THIS RECORDspecies: Raphanus sativus var. oleiformis
miRNA family: MIR2673
source: miRNEST
Taxonomy by NCBI:
Raphanus sativus var. oleiformis Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTCTTCTTCTTCCTCTTCCA miRNA* GAAGGGTAAGAGACGAGTGT mismatches: 3 bulges: 1 |
pre-miRNA
TTCAGCCAGATGGAAGGGTAAGAGACGAGTGTGCGATAGAGCCAGGGGCTAACGAGAAGGAGAGAAACCAAATCTTTCTGTGGCAATCTCGTGCTCACTA
TCCTCATCACGCTTGTTACTATCTCTCTCCTCCACATCTCTTCTTCTTCCTCTTCCAACACTTTAT
dot-bracket secondary structure
..........((((((((.((((((.(((((((.((..(((..(((((.(((((((.((((.(((((.......)))))((((((......))).)))..
)))).......)))))))...)))))))).)))))).))).)).)))).)))))))).........
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TTCAGCCAGATGGAAGGGTAAGAGACGAGTGTGCGATAGAGCCAGGGGCTAACGAGAAGGAGAGAAACCAAATCTTTCTGTGGCAATCTCGTGCTCACTA
TCCTCATCACGCTTGTTACTATCTCTCTCCTCCACATCTCTTCTTCTTCCTCTTCCAACACTTTAT
dot-bracket secondary structure
..........((((((((.((((((.(((((((.((..(((..(((((.(((((((.((((.(((((.......)))))((((((......))).)))..
)))).......)))))))...)))))))).)))))).))).)).)))).)))))))).........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q8LB33|FB330_ARATH: 2e-17 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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