miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002424
species: Raphanus sativus var. oleiformis
miRNA family: MIR2673
source: miRNEST

Taxonomy by NCBI:
Raphanus sativus var. oleiformis Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCTCTTCCTCTTCTTCTTCTT

miRNA*
 GGATAATCAAGTGGAGAGAAA

mismatches: 3
bulges: 2
View larger
pre-miRNA
 TGCATAAAGGAAGGATAATCAAGTGGAGAGAAAAAGCTAAGCTACACTTACACATACTGTACATGAAGAAGGATTCAAAATTCCATAATTGAGAGACTAA
TCAGTGCACATTAGACTCTAATTACACAAATAAAACCGTATCCGAAACAATACACAGGCTTACATAAAAAACAAAGCAAAAAATGTAGGAGTATTGTTTT
GTCATCTCCGTGGCACATTCAAAGGTTTTATTCTCTCTGGTCTCATCTCCTCTGTTCTTGGAAGGTTTTTATTTAGACAAGAAGGGGTCACCACCATACA
TTGAGTTAAAACTCGCTTTCAGTCTCGTGAACGTACAAACCAGAGGAAAGACAACAAGCAGCTACTCTTTTTATCCCTTATGCTGCTTAGGCTCCTGTTG
CTATTGCTGCTACCGCTCCTCTTTGTGCTCTCGCTACCCCTCGACTCAGGCAATCTATTCCACCACTCTCTATCCTCTGTTTTCAAAGACTCATCAGAGA
TCGAAGGTCTCGGCGAAACCTGAGAATCTTTAACAGAATCCTTCTCCTTTCTCTTCCTCTTCTTCTTCTTCTTTTTCGC

dot-bracket secondary structure
.((..((((((((((.((..(((.(((((((((.(((...))).((..((((.....))))..)).((((((((((.(((.....(((((.((((.((((
(........))))).)))))))))....(((((((((..((..((((((((((.....(((((((.................))))))).))))))))))
(((((....)))))..)).....))))))))).((((.(((.((.((.(((.((.((((.((.(((((((....(((((.((.((((........(((.(
(.((((....))))((((..((((..((((..((((((...((((((.((.(((.(((((((...................))))))).(((.......)
)).)))))((....))))))))))))))..))))........)))).)))).)).))).........)))).))...)))))..)))))))..)).))))
.)).)))....)).)).))).))))...)))....))))))))))..)))))))))..))).)).))))))))))..))


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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