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Species belonging to selected taxon:

Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis



ABOUT THIS RECORD

ID: MNEST002429
species: Raphanus sativus var. oleiformis
miRNA family: miR160a
source: miRNEST

Taxonomy by NCBI:
Raphanus sativus var. oleiformis Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GCGTATGAGGAGCCAAGCATA

miRNA*
 TGCCTGGCTCCCTGTATGCCA

mismatches: 2
bulges: 0
View larger
pre-miRNA
 ATGTATTATATATGTATATGCCTGGCTCCCTGTATGCCATACACTAAGTTCATCGACCATCGGCGACCTCGGTGGATGGCGTATGAGGAGCCAAGCATAT
TCTCAGCATAGACA

dot-bracket secondary structure
.(((....(((.((.((((((.(((((((.((((((((((.((((.((.((.((((...)))).)).)).)))).)))))))))).))))))).))))))
...))..))).)))


SIMILARITIES
miRBase bra-MIR160a: 4e-22

PMRD bra-miR160a: 4e-22

microPC miR160: 3e-32		UniProt no hits

RFAM mir-160: 0.000000000000007		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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