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Species belonging to selected taxon:

Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis



ABOUT THIS RECORD

ID: MNEST002432
species: Raphanus sativus var. oleiformis
miRNA family: MIR160
source: miRNEST

Taxonomy by NCBI:
Raphanus sativus var. oleiformis Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCCTGGCTCCCTGTATGCCA

miRNA*
 GCGTATGAGGAGCCAAGCATA

mismatches: 2
bulges: 0
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pre-miRNA
 TAGTACATATATGCCTGGCTCCCTGTATGCCATACACTAAGCTCATCGACCATCGAGGACTTACGTGGATGGCGTATGAGGAGCCAAGCATATTTTCATA


dot-bracket secondary structure
........((((((.(((((((.((((((((((.(((((((.((.((((...)))).)))))).))).)))))))))).))))))).)))))).......



SIMILARITIES
miRBase bra-MIR160a: 2e-27

PMRD bra-miR160a: 2e-27

microPC miR160: 9e-23		UniProt no hits

RFAM mir-160: 2e-17		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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