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Species belonging to selected taxon:

Raphanus sativus var. oleiformis



ABOUT THIS RECORD

ID: MNEST002435
species: Raphanus sativus var. oleiformis
miRNA family: miR167a
source: miRNEST

Taxonomy by NCBI:
Raphanus sativus var. oleiformis Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GATCATGTTTGCAGTTTCACC

miRNA*
 TGAAGCTGCCAGCATGATCTA

mismatches: 3
bulges: 0
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pre-miRNA
 CACAGGCATCTGATGAAGCTGCCAGCATGATCTAATTAACTTTCTTTCTCCGTTTGTTTTCATGACGATGGAAAGAGATGAGTGTAGATTAGATCATGTT
TGCAGTTTCACCCGTTGACTAT

dot-bracket secondary structure
..(((....))).(((((((((.((((((((((((((.(((((((((.(((..(((((.....))))).))).))))).))))...))))))))))))))
.)))))))))............


SIMILARITIES
miRBase bra-MIR167c: 1e-37

PMRD bra-miR167c: 1e-37

microPC miR167: 4e-47		UniProt no hits

RFAM MIR167_1: 2e-27		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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