miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002435
species: Raphanus sativus var. oleiformis
miRNA family: miR167a
source: miRNEST

Taxonomy by NCBI:
Raphanus sativus var. oleiformis Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GATCATGTTTGCAGTTTCACC

miRNA*
 TGAAGCTGCCAGCATGATCTA

mismatches: 3
bulges: 0
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pre-miRNA
 CACAGGCATCTGATGAAGCTGCCAGCATGATCTAATTAACTTTCTTTCTCCGTTTGTTTTCATGACGATGGAAAGAGATGAGTGTAGATTAGATCATGTT
TGCAGTTTCACCCGTTGACTAT

dot-bracket secondary structure
..(((....))).(((((((((.((((((((((((((.(((((((((.(((..(((((.....))))).))).))))).))))...))))))))))))))
.)))))))))............


SIMILARITIES
miRBase bra-MIR167c: 1e-37

PMRD bra-miR167c: 1e-37

microPC miR167: 4e-47		UniProt no hits

RFAM MIR167_1: 2e-27		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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