ABOUT THIS RECORDspecies: Saccharum hybrid cultivar CoS 767
miRNA family: MIR166
source: miRNEST
Taxonomy by NCBI:
Saccharum hybrid cultivar CoS 767 Saccharum hybrid cultivar Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCC miRNA* AATGTTGTCTGGTTCAAGG mismatches: 3 bulges: 0 |
pre-miRNA
GGGGAAGATATGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTCGCTTGCGATTTAAGGATGATTCGTGCATGGCATGTGTAGTTTTT
ATTCCTTGAATCTGTGGGATCTCGGACCAGGCTTCATTCCCCTCAGCAATAGCTTCAAATGATATCGCGG
dot-bracket secondary structure
......((((((((((((((.((...((((.((((((..(((((((((.(((((((((....((((((((((.((..(((((...))))).......)).
..)))))))))).))))))))).)))))))))..)))))).)))))))))))))))).....))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGGGAAGATATGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTCGCTTGCGATTTAAGGATGATTCGTGCATGGCATGTGTAGTTTTT
ATTCCTTGAATCTGTGGGATCTCGGACCAGGCTTCATTCCCCTCAGCAATAGCTTCAAATGATATCGCGG
dot-bracket secondary structure
......((((((((((((((.((...((((.((((((..(((((((((.(((((((((....((((((((((.((..(((((...))))).......)).
..)))))))))).))))))))).)))))))))..)))))).)))))))))))))))).....))))....
SIMILARITIES| miRBase sbi-MIR166a: 3e-33 PMRD sbi-miR166a: 3e-33 microPC miR166: 2e-31 | UniProt no hits RFAM mir-166: 6e-38 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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