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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST002444
species: Saccharum hybrid cultivar CoS 767
miRNA family: miR166d
source: miRNEST

Taxonomy by NCBI:
Saccharum hybrid cultivar CoS 767 Saccharum hybrid cultivar Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGAATGTTGTCTGGTTCAAGG

miRNA*
 TCGGACCAGGCTTCATTCCCC

mismatches: 3
bulges: 0
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pre-miRNA
 GGGGGAAGATATGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTCGCTTGCGATTTAAGGATGATTCGTGCATGGCATGTGTAGTTTT
TATTCCTTGAATCTGTGGGATCTCGGACCAGGCTTCATTCCCCTCAGCAATAGCTTCAAATGATATCGCGGA

dot-bracket secondary structure
.......((((((((((((((.((...((((.((((((..(((((((((.(((((((((....((((((((((.((..(((((...))))).......))
...)))))))))).))))))))).)))))))))..)))))).)))))))))))))))).....)))).....


SIMILARITIES
miRBase sbi-MIR166a: 3e-33

PMRD sbi-miR166a: 3e-33

microPC miR166: 2e-31		UniProt no hits

RFAM mir-166: 6e-38		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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