ABOUT THIS RECORDspecies: Saccharum hybrid cultivar SP70-1143
miRNA family: MIRf1540
source: miRNEST
Taxonomy by NCBI:
Saccharum hybrid cultivar SP70-1143 Saccharum hybrid cultivar Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGCATGGGGATGTCAAAAGGA miRNA* TTTTTGACGTCCCCATGTCCC mismatches: 1 bulges: 0 |
pre-miRNA
GATAGGATCCCCTTTTTGACGTCCCCATGTCCCCCCGTGTGGCGGCATGGGGATGTCAAAAGGAAAGGGATGG
dot-bracket secondary structure
......(((((((((((((((((((((((((.((......)).))))))))))))))))))))...)))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GATAGGATCCCCTTTTTGACGTCCCCATGTCCCCCCGTGTGGCGGCATGGGGATGTCAAAAGGAAAGGGATGG
dot-bracket secondary structure
......(((((((((((((((((((((((((.((......)).))))))))))))))))))))...)))))..
SIMILARITIES| miRBase no hits PMRD osa-miRf10719-akr: 0.00000000006 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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