ABOUT THIS RECORDspecies: Saccharum hybrid cultivar SP70-1143
miRNA family: MIR444
source: miRNEST
Taxonomy by NCBI:
Saccharum hybrid cultivar SP70-1143 Saccharum hybrid cultivar Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCAGTTGTTGCCTCAAGCTT miRNA* GCATGAGGCAGGAACTGCATT mismatches: 2 bulges: 0 |
pre-miRNA
TATTGCATATGGTGGCACCAAGCATGAGGCAGGAACTGCATTACTTGCAAGAAAGTCACAAAATCAATTGCAGGATCATACTTGTGGCTTTCTTGCAAGT
TGTGCAGTTGTTGCCTCAAGCTTGCTGCCTCCCTTTGCCAG
dot-bracket secondary structure
....(((...((.((((.(((((.((((((((.((((((((.(((((((((((((((((((.(((........))).....)))))))))))))))))))
.)))))))).)))))))).))))).))))..))..)))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TATTGCATATGGTGGCACCAAGCATGAGGCAGGAACTGCATTACTTGCAAGAAAGTCACAAAATCAATTGCAGGATCATACTTGTGGCTTTCTTGCAAGT
TGTGCAGTTGTTGCCTCAAGCTTGCTGCCTCCCTTTGCCAG
dot-bracket secondary structure
....(((...((.((((.(((((.((((((((.((((((((.(((((((((((((((((((.(((........))).....)))))))))))))))))))
.)))))))).)))))))).))))).))))..))..)))...
SIMILARITIES| miRBase ssp-MIR444b: 2e-55 PMRD tae-miR444: 3e-23 microPC miR444: 5e-47 | UniProt sp|Q6Z6W2|MAD57_ORYSJ: 0.0001 RFAM MIR444: 9e-49 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
