miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Zea mays, Sorghum bicolor

ABOUT THIS RECORD

ID: MNEST002465
species: Saccharum officinarum
miRNA family: MIR1848
source: miRNEST

Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TCGCGCCGGCGCGCGCGTGGG

miRNA*
TGCGCCGCGTGCTCGCGGAGA

mismatches: 4
bulges: 2

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pre-miRNA
ACCCGTCGCGGTTGAAGCTGTTCGCGCCGGCGCGCGCGTGGGTGCGCCGCGTGCTCGCGGAGAAGCTCGGGCGGGAGGCCG

dot-bracket secondary structure
.((((((.((.....((((.(((.(((.(((((((((((....))).)))))))).)))))).))))))))))))......

SIMILARITIES

miRBase no hits

PMRD no hits

microPC no hits

UniProt no hits

RFAM no hits

most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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