ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIRf34
source: miRNEST
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAAGGGACGGAGGGAGTACGT miRNA* GTACTCCCTCTGTCCCTGAAT mismatches: 3 bulges: 0 |
pre-miRNA
AGGCTGTTTTGTGTACTCCCTCTGTCCCTGAATGTTTGTCTCTAGAAAACCGTGGTTTCCTCACAGACACGTTTTCCGGACGACATATAAAAAGGGACGG
AGGGAGTACGTACTACCAAA
dot-bracket secondary structure
.((..((....((((((((((((((((((...(((.(((((((.((((((.(((.............))))))))).))).)))).)))...))))))))
)))))))))).))..))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
AGGCTGTTTTGTGTACTCCCTCTGTCCCTGAATGTTTGTCTCTAGAAAACCGTGGTTTCCTCACAGACACGTTTTCCGGACGACATATAAAAAGGGACGG
AGGGAGTACGTACTACCAAA
dot-bracket secondary structure
.((..((....((((((((((((((((((...(((.(((((((.((((((.(((.............))))))))).))).)))).)))...))))))))
)))))))))).))..))...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
