miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Panicum virgatum, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Cenchrus ciliaris, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST002473
species: Saccharum officinarum
miRNA family: MIRf34
source: miRNEST

Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AAAGGGACGGAGGGAGTACGC

miRNA*
 ATACTCCTCTGTCCCTTAAC

mismatches: 4
bulges: 1
View larger
pre-miRNA
 TACTAGTTGTGTTCGATTCTTTTGGGACAATAGCAAGCATACCTTTTTCTCGTCGTTGTTATATACTCCTCTGTCCCTTAACATGTGTCTGTAGAAAACC
ATGTTTCCCTCACAAACACGCTTCTCGGGCGACACTTAAAAGGGGCGACACTTAAAAGGGACGGAGGGAGTACGCAACCTGTTTGTACAAACAGGTACAT
ATTTAGATGTTCTATATAGTGGCTGATATGCCGA

dot-bracket secondary structure
.....(((((.(((((.....)))))...))))).((((.((.........))...))))...((((((((((((((((.....(((((.((...((((.
..))))((((........((((.....)))).........)))))))))))....)))))))))).))))))....((((((((....))))))))...(
((.((((...)))).))).((((......)))).


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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