miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Panicum virgatum, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Cenchrus ciliaris, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST002477
species: Saccharum officinarum
miRNA family: MIRf1372
source: miRNEST

Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GCGAGCTTCTCGAAGATGTCG

miRNA*
 GCGTGCTTGGCGAGCTCGCCG

mismatches: 3
bulges: 0
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pre-miRNA
 CCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGCACCGACGTCTGGATCTCCCTGGAGGTGATGGTGGGCTTCTTGTTGTAGCGGG
CAAGCTTGGCGGCCTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAC

dot-bracket secondary structure
...(((..((((((((..((((.(((((((((((.((((..(((((.(((((((.(((((......))))).))..))))).))))).(((((.(((...
...)))))))).)))).))))))))))).))))..))))))))..)))..


SIMILARITIES
miRBase no hits

PMRD osa-miRf10144-akr: 1e-59

microPC no hits		UniProt sp|Q6ZBP3|H2B2_ORYSJ: 3e-20

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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