ABOUT THIS RECORDspecies: Ciona intestinalis
miRNA family: mir-1502
source: miRBase, original name: cin-mir-1502a (MI0015541)
Taxonomy by NCBI:
Ciona intestinalis Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAACTTTCTAAGGAATAG miRNA* AATTCTTGAAAGTCAAC mismatches: 1 bulges: 2 |
pre-miRNA
TTGAACTTTCTAAGGAATAGGTTTAAACCAAAACTACAACCTAATTCTTGAAAGTCAAC
dot-bracket secondary structure
((((.(((((.(((((.((((((..............)))))).)))))))))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Hendrix D, Levine M, Shi W, Genome Biol. 11:R39(2010)., "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data"
TTGAACTTTCTAAGGAATAGGTTTAAACCAAAACTACAACCTAATTCTTGAAAGTCAAC
dot-bracket secondary structure
((((.(((((.(((((.((((((..............)))))).)))))))))))))).
SIMILARITIES| miRBase cin-mir-1502a: 8e-28 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: cin-mir-4007 from miRBase (MNEST024957) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Hendrix D, Levine M, Shi W, Genome Biol. 11:R39(2010)., "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data"
