miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Ciona intestinalis, Ciona savignyi



ABOUT THIS RECORD

ID: MNEST024948
species: Ciona intestinalis
source: miRBase, original name: cin-mir-4006c (MI0015532)

Taxonomy by NCBI:
Ciona intestinalis Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCCTTTGTTTCTATGTTTCA

miRNA*
GAACATGTAAATAAGGGCTG

mismatches: 3
bulges: 0

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pre-miRNA
TGGAACATGTAAATAAGGGCTGTTTATCGCATCCTTTGTTTCTATGTTTCA

dot-bracket secondary structure
.((((((((.(((((((((.(((.....))).))))))))).)))))))).


SIMILARITIES
miRBase cin-mir-4006c: 4e-23

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Hendrix D, Levine M, Shi W, Genome Biol. 11:R39(2010)., "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data"




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