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Species belonging to selected taxon:

Ciona intestinalis, Ciona savignyi



ABOUT THIS RECORD

ID: MNEST024957
species: Ciona intestinalis
miRNA family: mir-1502
source: miRBase, original name: cin-mir-4007 (MI0015540)

Taxonomy by NCBI:
Ciona intestinalis Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGACTTTCAAGAATTAGGT

miRNA*
CTATTCCTTAGAAAGTTCAA

mismatches: 4
bulges: 2

View larger
pre-miRNA
TTGACTTTCAAGAATTAGGTTGTAGTTTTGGTTTAAACCTATTCCTTAGAAAGTTCAA

dot-bracket secondary structure
.(((((((((((...((((((..............))))))...))).))))).))).


SIMILARITIES
miRBase cin-mir-1502a: 3e-27

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

Identical with: cin-mir-1502a from miRBase (MNEST024861)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence

references

[1] Hendrix D, Levine M, Shi W, Genome Biol. 11:R39(2010)., "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data"




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