ABOUT THIS RECORDspecies: Ciona savignyi
miRNA family: let-7
source: miRBase, original name: csa-let-7c-1 (MI0007183)
Taxonomy by NCBI:
Ciona savignyi Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGGTAGTAGGTTATGCAGTT miRNA* CTGTGTAACCTTCTGCCTTTGT mismatches: 3 bulges: 0 |
pre-miRNA
GGGCTTCTCCCACAATGAGGTAGTAGGTTATGCAGTTTTTGCCTTGAATGTTTTTAGAGGCACAGGAGCTACTGTGTAACCTTCTGCCTTTGTGGCAGAT
G
dot-bracket secondary structure
.....(((.(((((..(((((((.((((((((((((....((((((..(((((....))))))))).)).)))))))))))).)))))))))))).))).
.
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
GGGCTTCTCCCACAATGAGGTAGTAGGTTATGCAGTTTTTGCCTTGAATGTTTTTAGAGGCACAGGAGCTACTGTGTAACCTTCTGCCTTTGTGGCAGAT
G
dot-bracket secondary structure
.....(((.(((((..(((((((.((((((((((((....((((((..(((((....))))))))).)).)))))))))))).)))))))))))).))).
.
SIMILARITIES| miRBase cin-let-7a-1: 0.000000000005 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 2e-42 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
