ABOUT THIS RECORDspecies: Ciona savignyi
miRNA family: mir-124
source: miRBase, original name: csa-mir-124-1 (MI0007192)
Taxonomy by NCBI:
Ciona savignyi Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAAGGCACGCGGTGAATGCCAA miRNA* CGTGTTTATTGTGGACCTTGCC mismatches: 5 bulges: 0 |
pre-miRNA
TTATAATCGACGTCATAGCCAAGTTCGATCGTGTTTATTGTGGACCTTGCCGTGTGACGTCACAGTAAGGCACGCGGTGAATGCCAACGAACTCGCGCTG
CAT
dot-bracket secondary structure
...............(((((.((((((...((((((((((((..((((((.(((......))).))))))..))))))))))))...)))))).).))))
...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
TTATAATCGACGTCATAGCCAAGTTCGATCGTGTTTATTGTGGACCTTGCCGTGTGACGTCACAGTAAGGCACGCGGTGAATGCCAACGAACTCGCGCTG
CAT
dot-bracket secondary structure
...............(((((.((((((...((((((((((((..((((((.(((......))).))))))..))))))))))))...)))))).).))))
...
SIMILARITIES| miRBase cin-mir-124-1: 4e-22 PMRD no hits microPC no hits | UniProt no hits RFAM mir-124: 3e-38 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
