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Species belonging to selected taxon:
Panicum virgatum
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Cenchrus ciliaris
,
Zea mays
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST002539
species:
Saccharum officinarum
miRNA family:
MIR437
source:
miRNEST
Taxonomy by NCBI:
Saccharum officinarum
Saccharum officinarum complex
Saccharum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GAAGTTAGAGAAGTTTGACAT
miRNA*
GTCAAAACTTTTCTAACTTTGA
mismatches:
2
bulges:
1
View larger
pre-miRNA
TAAGAAACAGCCAATGATACTCCTCCTTTTCTAAAATGCAGGGCGTTTTACTTTTGTCCTAA
GTCAAAACTTTTCTAACTTTGA
ACAATTTTATAGAAAA
ATATATTGACATCTACAATACCAAATAAGCGCACTGTCAAGACATTTCATGGTGGATTTAATGAAGCTAATTTGATGTTTCAGATGTCTGTGCAATGTTC
TATACACAGT
GAAGTTAGAGAAGTTTGACAT
CGGGCAAAAATAAAATGACATACATTTTTGAATGGTTGGGGTAGTATACAATGGACTAC
dot-bracket secondary structure
........(((((.((.((((((.((..(((.((((((.....(((((((.((((((((...
((((((.((((((((((((((.
.......(((((((..
...(((.(((((((..((((.(((((.(((.((...(((...(((...))).)))......))..))).))))).))))..))))))).))).....)))
)))).....)
)))))))))))))))))))..
.)))))))).))))))).....)))))).))).))..)))))).....)).))).))..
SIMILARITIES
miRBase
sbi-MIR437f
:
5e-21
PMRD
sbi-miR437f
:
5e-21
microPC
miR437
:
0.00000002
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record