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Species belonging to selected taxon:

Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum



ABOUT THIS RECORD

ID: MNEST002550
species: Saccharum officinarum
miRNA family: MIR408
source: miRNEST

Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCACTGCCTCTTCCCTGGCT

miRNA*
 ACAGGGATGAGGCAGAGCATG

mismatches: 3
bulges: 0
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pre-miRNA
 TATGGTTGGAGACAGGGATGAGGCAGAGCATGGGATGAGGCCATCAACAAAATTTCCAATTTCTGTCCTCCGCTAGGCCGCTACTGCATTTCTGTTTGCT
TGCTCACAAAACGGAGGGATTTGTGAGAGTTATCAGGCAGAAAGAACAAAGAAGGTGCCTCCCTGGTGAAGTGGTGATGGCCTGACCTGAGACGGCTGAG
AGCTCAGCTGGTGTCCTGTTGTTGCTTCCTCCCCTGCACTGCCTCTTCCCTGGCTCCCCACCG

dot-bracket secondary structure
...(((.((((.((((((.(((((((.(((.((((.(((((...(((((..((..((..((((.(((.......((((((.((((((.((((((((((..
..((((((((.........))))))))......))))))))))..((.......))(((.....)))...)))))).)))))))))..)))).((((((.
...)))))))).))..)))))..))))).)))).))).))))))).)))))).))))..))).


SIMILARITIES
miRBase sof-MIR408a: 8e-149

PMRD sof-miR408a: 8e-149

microPC miR408: 0.0002		UniProt no hits

RFAM MIR408: 0.00000000000007		most similar mature miRNAs

Identical with: sof-MIR408a from miRBase (MNEST042462)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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