miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Gallus gallus



ABOUT THIS RECORD

ID: MNEST025979
species: Gallus gallus
miRNA family: mir-184
source: miRBase, original name: gga-mir-184 (MI0001227)

Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGACGGAGAACTGATAAGGGT

miRNA*
CCTTATCACTTTTCCAGCCCAGC

mismatches: 3
bulges: 1

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pre-miRNA
CCGCTCTCACCCCCTTATCACTTTTCCAGCCCAGCTTCTTCGCTCTGACTGTTGGACGGAGAACTGATAAGGGT

dot-bracket secondary structure
...........(((((((((.((((((.(.(((((.((........))..))))).))))))).))))))))).


SIMILARITIES
miRBase tgu-mir-184: 3e-25

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-184: 2e-35

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence

references

[1] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"




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