ABOUT THIS RECORDspecies: Solanum habrochaites
miRNA family: MIR2911
source: miRNEST
Taxonomy by NCBI:
Solanum habrochaites Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGCCGGGGGACGGACTGGGAA miRNA* CCCAGTCCCGAACCCGTCGG mismatches: 5 bulges: 1 |
pre-miRNA
TCTGAGGGCTGGGCACGGGGGTCCCAGTCCCGAACCCGTCGGCTGTCGGTGGACTGCTCGAGCTGCTCCCGCGGCGAGAGCGGGTCGCCGCGTGCCGGCC
GGGGGACGGACTGGGAACGGTTCCTTCGGGGGCCTT
dot-bracket secondary structure
((((...((...)).))))..(((((((((....(((((((((((.((((((.((((((..(((((....)))))..)))))).)))))))).))))).)
)))....)))))))))..((((((....))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TCTGAGGGCTGGGCACGGGGGTCCCAGTCCCGAACCCGTCGGCTGTCGGTGGACTGCTCGAGCTGCTCCCGCGGCGAGAGCGGGTCGCCGCGTGCCGGCC
GGGGGACGGACTGGGAACGGTTCCTTCGGGGGCCTT
dot-bracket secondary structure
((((...((...)).))))..(((((((((....(((((((((((.((((((.((((((..(((((....)))))..)))))).)))))))).))))).)
)))....)))))))))..((((((....))))))..
SIMILARITIES| miRBase peu-MIR2911: 1e-41 PMRD peu-miR2911: 1e-41 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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