miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Petunia axillaris subsp. axillaris, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum



ABOUT THIS RECORD

ID: MNEST002645
species: Solanum lycopersicum
miRNA family: miR172a
source: miRNEST

Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GTGGCATAATCAAGATTCACG

miRNA*
 AGAATCTTGATGATGCTGCAT

mismatches: 2
bulges: 0
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pre-miRNA
 TATTTTTCTTACAGTCGTTGTTTGCATATGTGGCATAATCAAGATTCACGTGAAAAGTTGCAAATTGGTTATATAATTGATGAAATTAATGGCTGGCTAT
TTGAAACTCACGAGAATCTTGATGATGCTGCATCAGCAATAAACGACTATTGCAATTAG

dot-bracket secondary structure
............(((((((..((((..(((((((((.((((((((((.(((((...(((.((((((((((((.(((((.....))))))))))))...))
))).)))))))).)))))))))).)))))))))..))))..)))))))...........


SIMILARITIES
miRBase sly-MIR172a: 2e-55

PMRD sly-miR172a: 2e-55

microPC miR172: 2e-55		UniProt no hits

RFAM mir-172: 0.0000000006		most similar mature miRNAs

Identical with: sly-MIR172a from miRBase (MNEST041542)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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