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Species belonging to selected taxon:

Ipomoea batatas, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Petunia axillaris subsp. axillaris, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST002646
species: Solanum lycopersicum
miRNA family: MIR838
source: miRNEST

Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTTCCTTCTTCTTCTTGCAAG

miRNA*
 AAGGTAAAAGAGGAGGGGCATC

mismatches: 4
bulges: 1
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pre-miRNA
 ACTATCCAACTTACCTCTATTCTTCCTTCTTCTTCTTGCAAGCCTTCTAGCAAAGGTAAAAGAGGAGGGGCATCATTGGAGGTCATCAACAA

dot-bracket secondary structure
............(((((((....(((((((((((.((((..((......))....)))))))))))))))......))))))).........


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
degradome data
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