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Species belonging to selected taxon:

Gallus gallus, Taeniopygia guttata, Meleagris gallopavo, Lonchura striata domestica



ABOUT THIS RECORD

ID: MNEST026466
species: Taeniopygia guttata
miRNA family: mir-135
source: miRBase, original name: tgu-mir-135a-2 (MI0013848)

Taxonomy by NCBI:
Taeniopygia guttata Taeniopygia Estrildinae Estrildidae Passeroidea Passeriformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TATGGCTTTTTATTCCTATGTGA

miRNA*
ATGTAGGGCGAAAAGCCATGGG

mismatches: 1
bulges: 1

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pre-miRNA
CCTCTGCTGTGGTTTATGGCTTTTTATTCCTATGTGATTGCTTTCCCGAACTCATGTAGGGCGAAAAGCCATGGGCTACACAGAGG

dot-bracket secondary structure
((((((.((((((((((((((((((..((((((((((...(......)...)))))))))).))))))))))))))))))))))))


SIMILARITIES
miRBase gga-mir-135a-3: 2e-32

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-135: 4e-31

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Solexa

references

[1] Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li, Nature. 464:757-762(2010)., "The genome of a songbird"




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