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Species belonging to selected taxon:

Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Solanum tuberosum



ABOUT THIS RECORD

ID: MNEST002649
species: Solanum lycopersicum
miRNA family: MIR156
source: miRNEST

Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CAGAAGATAGAGAGCACATAT

miRNA*
 TTGTGCTCTCTATGCTTCCG

mismatches: 3
bulges: 1
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pre-miRNA
 CAGAAGATAGAGAGCACATATGATGGAATGCTGCTGCTGCTGCTGCTAAATCTGGAGAGTCTTAACAATAAAAAAAAGCATTTCACTTCATTTGTGCTCT
CTATGCTTCCG

dot-bracket secondary structure
..((((((((((((((((.(((((((((((((..((.((.((..(((..........)))..)).)).))......)))))))))..)))).))))))))
)))).))))..


SIMILARITIES
miRBase sly-MIR156a: 0.000001

PMRD stu-miR157a: 0.000000006

microPC miR157: 0.000000006		UniProt no hits

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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