ABOUT THIS RECORDspecies: Solanum torvum
miRNA family: MIR398
source: miRNEST
Taxonomy by NCBI:
Solanum torvum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATGTTCTCAGGTCGCCCCTA miRNA* GGGATGATTTGAGAACATATG mismatches: 2 bulges: 0 |
pre-miRNA
ACAATATGTGGATATGTTCAACAGGGATGATTTGAGAACATATGTATGTGCATATTTTGTTTCTAATAATGTGACACATATGTTCTCAGGTCGCCCCTAT
TAACTATTCTTCATCGTTT
dot-bracket secondary structure
.....(((.(((...(((.((.((((.((((((((((((((((((...(((((...............)))))..)))))))))))))))))).)))).)
))))...))).))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACAATATGTGGATATGTTCAACAGGGATGATTTGAGAACATATGTATGTGCATATTTTGTTTCTAATAATGTGACACATATGTTCTCAGGTCGCCCCTAT
TAACTATTCTTCATCGTTT
dot-bracket secondary structure
.....(((.(((...(((.((.((((.((((((((((((((((((...(((((...............)))))..)))))))))))))))))).)))).)
))))...))).))).....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
