miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cichorium intybus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Taraxacum kok-saghyz, Taraxacum officinale, Cichorium endivia



ABOUT THIS RECORD

ID: MNEST002689
species: Taraxacum kok-saghyz
miRNA family: MIR166
source: miRNEST

Taxonomy by NCBI:
Taraxacum kok-saghyz Taraxacum Crepidinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCCCC

miRNA*
 GGAATGTTGTTTGGCTCGAGG

mismatches: 3
bulges: 0
View larger
pre-miRNA
 TTCTTTTGCGGGGAATGTTGTTTGGCTCGAGGTCACTAGAGAGCTTAGATCTCTCTCTCTATCTCTATCTCTATATACATCTATACATATAGATACAGAT
ATATGTATCTATCTATGATGTTATAATTATGCTCAATTGGTCAACGGATCCAACATCCATGGTCTTTGTTGATTAATGAGCTTTAGATGAATCTTGATCG
CTGGATCTGGTGTACTCGGACCAGGCTTCATTCCCCCCAATTGT

dot-bracket secondary structure
.....(((.((((((((..((((((.(((((..(((((((...((..((((........(((((.((....((((.(((((.(((...(((((((((...
...))))))))).))))))))))))..)).(((((.((((((((((((.(((.......)))..)))))))))))))))))...)))))......)))).
..)).)))))))..))))).))))))..)))))))).)))....


SIMILARITIES
miRBase ptc-MIR166a: 0.0000000008

PMRD ptc-miR166a: 0.0000000008

microPC miR166: 0.0000008		UniProt no hits

RFAM mir-166: 0.0000009		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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