miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST002700
species: Taraxacum officinale
miRNA family: MIR156
source: miRNEST

Taxonomy by NCBI:
Taraxacum officinale Taraxacum Crepidinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAGAAGAGAGTGAGCATA

miRNA*
 TGCTCACTTCTCTTGCTGTCAGC

mismatches: 0
bulges: 2
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pre-miRNA
 TAAAAGAAAGCTGACAGAAGAGAGTGAGCATATGCAAGCAATTGTATAGAGAGATATGCTCTTGTTGTAATTATGATGCGTGTGCTCACTTCTCTTGCTG
TCAGCTCCTATCG

dot-bracket secondary structure
........((((((((((((((((((((((((((((..((((((((..(((((.....)))))..))))))..)).))))))))))))).)))))).)))
)))))).......


SIMILARITIES
miRBase zma-MIR156c: 0.0000004

PMRD zma-miR156c: 0.0000004

microPC miR156: 4e-47		UniProt no hits

RFAM mir-156: 0.000006		most similar mature miRNAs

Identical with: miR156 from microPC (MNEST045587)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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