ABOUT THIS RECORDspecies: Taraxacum officinale
miRNA family: MIR156
source: miRNEST
Taxonomy by NCBI:
Taraxacum officinale Taraxacum Crepidinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCATA miRNA* TGCTCACTTCTCTTGCTGTCAGC mismatches: 0 bulges: 2 |
pre-miRNA
TAAAAGAAAGCTGACAGAAGAGAGTGAGCATATGCAAGCAATTGTATAGAGAGATATGCTCTTGTTGTAATTATGATGCGTGTGCTCACTTCTCTTGCTG
TCAGCTCCTATCG
dot-bracket secondary structure
........((((((((((((((((((((((((((((..((((((((..(((((.....)))))..))))))..)).))))))))))))).)))))).)))
)))))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TAAAAGAAAGCTGACAGAAGAGAGTGAGCATATGCAAGCAATTGTATAGAGAGATATGCTCTTGTTGTAATTATGATGCGTGTGCTCACTTCTCTTGCTG
TCAGCTCCTATCG
dot-bracket secondary structure
........((((((((((((((((((((((((((((..((((((((..(((((.....)))))..))))))..)).))))))))))))).)))))).)))
)))))).......
SIMILARITIES| miRBase zma-MIR156c: 0.0000004 PMRD zma-miR156c: 0.0000004 microPC miR156: 4e-47 | UniProt no hits RFAM mir-156: 0.000006 | most similar mature miRNAs |
Identical with: miR156 from microPC (MNEST045587) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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