ABOUT THIS RECORDspecies: Taraxacum officinale
miRNA family: MIR1436
source: miRNEST
Taxonomy by NCBI:
Taraxacum officinale Taraxacum Crepidinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATTTTGGGACGGAGGGAGT miRNA* ATCAATCGTCACAACATGAGA mismatches: 5 bulges: 1 |
pre-miRNA
ATGGACTATCATTTTGGGACGGAGGGAGTATGAAATTTGTTTCCATTGTTGCAGGAGGTTATATCTGAAACCCACATAGTCCTCAACACCCTTTTTAGGT
TTCCATGAATCAATCGTCACAACATGAGAGAGAA
dot-bracket secondary structure
.....((.((((.(((.(((((...((.(((((((((((.......(((((.((((((((........)))).......))))))))).......)))))
)).))))..))..))))).))).)))).))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ATGGACTATCATTTTGGGACGGAGGGAGTATGAAATTTGTTTCCATTGTTGCAGGAGGTTATATCTGAAACCCACATAGTCCTCAACACCCTTTTTAGGT
TTCCATGAATCAATCGTCACAACATGAGAGAGAA
dot-bracket secondary structure
.....((.((((.(((.(((((...((.(((((((((((.......(((((.((((((((........)))).......))))))))).......)))))
)).))))..))..))))).))).)))).))....
SIMILARITIES| miRBase tae-MIR1122: 0.0001 PMRD osa-miRf10743-akr: 0.000007 microPC miR1439: 0.0001 | UniProt no hits RFAM MIR1122: 0.00003 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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