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Species belonging to selected taxon:

Thellungiella halophila



ABOUT THIS RECORD

ID: MNEST002708
species: Thellungiella halophila
miRNA family: MIRf129
source: miRNEST

Taxonomy by NCBI:
Thellungiella halophila Thellungiella Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCCGGAGGGATGCCTTCCTTG

miRNA*
 AGGGTAATTGTCTTTCCGGTGA

mismatches: 4
bulges: 1
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pre-miRNA
 GCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCCACCTCGAGGGTAA
TTGTCTTTCCGGTGAGTGTCTTCACAAAGATCT

dot-bracket secondary structure
........((((((((......(((((((((((...((((((...((((....(((.((((((((......)))))))).))).))))...))))))...
.)))))))))))..))))))))...........


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|P0CH32|UBQ4_ARATH: 4e-17

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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