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Species belonging to selected taxon:

Equus caballus



ABOUT THIS RECORD

ID: MNEST027179
species: Equus caballus
miRNA family: mir-433
source: miRBase, original name: eca-mir-433 (MI0012902)

Taxonomy by NCBI:
Equus caballus Equus subg. Equus Equus Equidae Perissodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATCATGATGGGCTCCTCGGTGT

miRNA*
TACGGTGAGCCTGTCATTATTC

mismatches: 5
bulges: 0

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pre-miRNA
TGCCCGGGGAGAAGTACGGTGAGCCTGTCATTATTCAGAGAGGCTAGATCCTCTGTGTTAAGAAGGATCATGATGGGCTCCTCGGTGTTCTCCAGGTAGC
GGCACCACACCATGAAGGCAGCCC


dot-bracket secondary structure
((((...((((((...(((.(((((((((((.(((((.(((((......))))).))........))).))))))))))).)))...)))))).(((.(.
(....).)))).....))))....



SIMILARITIES
miRBase mmu-mir-433: 8e-64

PMRD no hits

microPC no hits
UniProt sp|Q7M732|RTL1_MOUSE: 2e-16

RFAM mir-433: 4e-44

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y, Genomics. 94:125-131(2009)., "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach"




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