ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIRf129
source: miRNEST
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCGGAGGGATGCCTTCCTTG miRNA* GGGGGGGCTCCTTCTGAATG mismatches: 3 bulges: 1 |
pre-miRNA
GGACCAGATGGAGGGGGGGCTCCTTCTGAATGTTATAGTCGGCTAGGGTACGGCCGTCTTCAAGCTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCCGG
AGGGATGCCTTCCTTGTCCTGGATC
dot-bracket secondary structure
...(((...(((((((((((((((((((.((..((..(((((((.......))))((((((..((((.....))))))))))..)))..))...)).)))
))))).))))))))..))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GGACCAGATGGAGGGGGGGCTCCTTCTGAATGTTATAGTCGGCTAGGGTACGGCCGTCTTCAAGCTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCCGG
AGGGATGCCTTCCTTGTCCTGGATC
dot-bracket secondary structure
...(((...(((((((((((((((((((.((..((..(((((((.......))))((((((..((((.....))))))))))..)))..))...)).)))
))))).))))))))..))))))...
SIMILARITIES| miRBase no hits PMRD ath-miRf10060-akr: 0.000000002 microPC no hits | UniProt sp|Q9FHQ6|UBQ9_ARATH: 0.000000000000002 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
