ABOUT THIS RECORDspecies: Equus caballus
miRNA family: mir-454
source: miRBase, original name: eca-mir-454 (MI0012786)
Taxonomy by NCBI:
Equus caballus Equus subg. Equus Equus Equidae Perissodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGTGCAATATTGCTTATAGGGT miRNA* CCTATCGATATTGTCTCTGCT mismatches: 1 bulges: 4 |
pre-miRNA
AGAACCCTATCGATATTGTCTCTGCTGTGTAAATCGCTCTGAGTAGTGCAATATTGCTTATAGGGTTTT
dot-bracket secondary structure
(((((((((((((((((((..((((((((.....)))....))))).)))))))))...))))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y, Genomics. 94:125-131(2009)., "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach"
AGAACCCTATCGATATTGTCTCTGCTGTGTAAATCGCTCTGAGTAGTGCAATATTGCTTATAGGGTTTT
dot-bracket secondary structure
(((((((((((((((((((..((((((((.....)))....))))).)))))))))...))))))))))
SIMILARITIES| miRBase cfa-mir-454: 3e-31 PMRD no hits microPC no hits | UniProt no hits RFAM mir-454: 1e-27 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y, Genomics. 94:125-131(2009)., "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach"
