ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIR2910
source: miRNEST
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGTTGGTGGAGCGATTTGTC miRNA* CAGCCTGCTAACTAGCTACG mismatches: 5 bulges: 1 |
pre-miRNA
GGGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTATCTAACGAGACCTCAGCCTGCTAACTAGCTACGCGGA
dot-bracket secondary structure
....((((...((((((((..((((..(((...((((.....((((....)))).)))).)))..)))).)))))))).)))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GGGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTATCTAACGAGACCTCAGCCTGCTAACTAGCTACGCGGA
dot-bracket secondary structure
....((((...((((((((..((((..(((...((((.....((((....)))).)))).)))..)))).)))))))).)))).
SIMILARITIES| miRBase no hits PMRD peu-miR2910: 8e-23 microPC no hits | UniProt no hits RFAM SSU_rRNA_eukarya: 3e-35 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
