ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTTCTTCATCTTCATCGTCA miRNA* GAGATAGAGATGGGGAATCA mismatches: 3 bulges: 1 |
pre-miRNA
TGGATGAAAAAGGAGATAGAGATGGGGAATCATAACAGGTACAACATGTGTCATGAATTGCTTTCGTCCTGGTTTTGTCAAGTTTGGAGCAAAATACACA
ATATCTCCCGCGGAATTCTCCATATTTGTCCTTGATTTCTTCATCTTCATCGTCATTTTCCGTG
dot-bracket secondary structure
.....(((((.((.(((.((((((((((((((....(((.((((.(((((....((((....(((((...(((.((((....((((...))))....)))
).)))....)))))))))..))))))))))))))).))))))))))).))).)).)))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TGGATGAAAAAGGAGATAGAGATGGGGAATCATAACAGGTACAACATGTGTCATGAATTGCTTTCGTCCTGGTTTTGTCAAGTTTGGAGCAAAATACACA
ATATCTCCCGCGGAATTCTCCATATTTGTCCTTGATTTCTTCATCTTCATCGTCATTTTCCGTG
dot-bracket secondary structure
.....(((((.((.(((.((((((((((((((....(((.((((.(((((....((((....(((((...(((.((((....((((...))))....)))
).)))....)))))))))..))))))))))))))).))))))))))).))).)).)))))....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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