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Species belonging to selected taxon:

Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Theobroma cacao



ABOUT THIS RECORD

ID: MNEST002732
species: Theobroma cacao
miRNA family: MIR166
source: miRNEST

Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCC

miRNA*
 AATGTTGTCTGGCTCGAGG

mismatches: 3
bulges: 0
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pre-miRNA
 CGGGGGAGGGGAATGTTGTCTGGCTCGAGGCCACCAACTAGATCTATAATTCTATCTCAATTGATCAAAATTTTCTGTGGATTTTATTTTTTCGACTAAA
GTTGAGATCATGATCATTGATCATAAGTTAGTGACGTCGGACCAGGCTTCATTCCCCCCAATTATTGCTTCCATG

dot-bracket secondary structure
.((.((.((((((((..((((((.((((...(((.((((.((((......((.(((((((((..(((((((..((....))....)))))...))....)
))))))))...)).....))))...)))).)))...)))).))))))..))))))))))..))............


SIMILARITIES
miRBase ctr-MIR166: 3e-18

PMRD vvi-miR166e: 0.00000000000001

microPC miR166: 0.0000000000002		UniProt no hits

RFAM mir-166: 0.0000000000002		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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