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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002732
species: Theobroma cacao
miRNA family: MIR166
source: miRNEST

Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCC

miRNA*
 AATGTTGTCTGGCTCGAGG

mismatches: 3
bulges: 0
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pre-miRNA
 CGGGGGAGGGGAATGTTGTCTGGCTCGAGGCCACCAACTAGATCTATAATTCTATCTCAATTGATCAAAATTTTCTGTGGATTTTATTTTTTCGACTAAA
GTTGAGATCATGATCATTGATCATAAGTTAGTGACGTCGGACCAGGCTTCATTCCCCCCAATTATTGCTTCCATG

dot-bracket secondary structure
.((.((.((((((((..((((((.((((...(((.((((.((((......((.(((((((((..(((((((..((....))....)))))...))....)
))))))))...)).....))))...)))).)))...)))).))))))..))))))))))..))............


SIMILARITIES
miRBase ctr-MIR166: 3e-18

PMRD vvi-miR166e: 0.00000000000001

microPC miR166: 0.0000000000002		UniProt no hits

RFAM mir-166: 0.0000000000002		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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