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Species belonging to selected taxon:

Theobroma cacao



ABOUT THIS RECORD

ID: MNEST002734
species: Theobroma cacao
miRNA family: miR168a
source: miRNEST

Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCCGCCTTGCATCAACTGAAT

miRNA*
 TCGCTTGGTGCAGGTCGGGAA

mismatches: 2
bulges: 0
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pre-miRNA
 ATTCAGTTACCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGATTGGCTGCTGCTCCTTAATAGTGGATTGGATTGGATTTAGGCCAGATGGCG
GGCCGTGACTGGAGGAGGCACGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGACCGCGGTGAGGGGTT

dot-bracket secondary structure
((((..((((((.((((((((.(((((.((((((((((.(((((.((((((...((((..(((((..(((((((((......))))).((((........
))))...)))))))))))))..)))))).))))).)))))))))).))))).)))))))))))))).)))).


SIMILARITIES
miRBase tcc-MIR168: 1e-91

PMRD rco-miR168: 3e-21

microPC miR168: 0.0000000001		UniProt no hits

RFAM MIR168: 5e-20		most similar mature miRNAs

Identical with: tcc-MIR168 from miRBase (MNEST041101)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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