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Species belonging to selected taxon:

Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Theobroma cacao



ABOUT THIS RECORD

ID: MNEST002737
species: Theobroma cacao
miRNA family: MIRf160
source: miRNEST

Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGCAGCAGCAGCAGCTGCAC

miRNA*
 GCAAGTTGCTTTGCTGTTTCA

mismatches: 4
bulges: 2
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pre-miRNA
 GGCTATCTCAATTGCAGCAGCAGCAGCTGCACCAGATGATATACCTACCAACAATCCTTCTTTCAGAGCAAGTTGCTTTGCTGTTTCAATAGCTTC

dot-bracket secondary structure
((((((.......(((((((.(((((((((...(((.(((.............)))..)))......)).))))))))))))))....))))))..


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|Q43725|CYSKM_ARATH: 0.0007

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




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