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Species belonging to selected taxon:

Theobroma cacao



ABOUT THIS RECORD

ID: MNEST002739
species: Theobroma cacao
miRNA family: MIR172
source: miRNEST

Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAATCTTGATGATGCTACAC

miRNA*
 GCAGCATCATCAAGATTCTCA

mismatches: 3
bulges: 0
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pre-miRNA
 AAGGGTCTTTTGTATAGTCGTTTATTGCCGATGCAGCATCATCAAGATTCTCACTTTCCAAACAACTTTGGCATAAAGGAGAAGGGAAAAGAAAGGGGAA
GGGGAGAAAAAAAGAAGAGAGTTTGTATTATCCATCACCACCACCGTGCATTTGCATGTGAATCTTGATGATGCTACACCCGCAAACAACGACTGTCAAT
CTATCTAT

dot-bracket secondary structure
..((((...(((.(((((((((..((((...((.((((((((((((((((((..(((((......(((((...)))))......))))).))..((.((.
(((......(((.........)))......))).))....))..(((((....))))).)))))))))))))))).))...))))..)))))))))))).
..))))..


SIMILARITIES
miRBase tcc-MIR172e: 2e-38

PMRD gma-miR172b: 5e-20

microPC miR172: 0.000003		UniProt no hits

RFAM mir-172: 9e-19		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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