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Species belonging to selected taxon:

Theobroma cacao



ABOUT THIS RECORD

ID: MNEST002740
species: Theobroma cacao
miRNA family: MIR156
source: miRNEST

Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAGAAGAGAGAGAGCACA

miRNA*
 TGCTTTCTCTTCTTCTGTCACC

mismatches: 0
bulges: 1
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pre-miRNA
 AGAGAAGAGATGGGGAAGATCATGACCATGTTGACAGAAGAGAGAGAGCACAACCCGGCATCAGCTAAAGAAAGTCTTTGCTTTTGTTGGGAGTGTGCTT
TCTCTTCTTCTGTCACCATCATCTTTTCACCCCCTCTCTCAAATA

dot-bracket secondary structure
.((((.(((..((((((((..((((...((.(((((((((((((((((((((.(((((((..(((.(((((...))))))))..)))))))..)))))))
)))).)))))))))).)))))).))))).))).))))))).....


SIMILARITIES
miRBase tcc-MIR156a: 4e-66

PMRD vvi-miR156a: 2e-27

microPC miR156: 0.000000000000008		UniProt no hits

RFAM mir-156: 3e-21		most similar mature miRNAs

Identical with: tcc-MIR156a from miRBase (MNEST041080)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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