miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002740
species: Theobroma cacao
miRNA family: MIR156
source: miRNEST

Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAGAAGAGAGAGAGCACA

miRNA*
 TGCTTTCTCTTCTTCTGTCACC

mismatches: 0
bulges: 1
View larger
pre-miRNA
 AGAGAAGAGATGGGGAAGATCATGACCATGTTGACAGAAGAGAGAGAGCACAACCCGGCATCAGCTAAAGAAAGTCTTTGCTTTTGTTGGGAGTGTGCTT
TCTCTTCTTCTGTCACCATCATCTTTTCACCCCCTCTCTCAAATA

dot-bracket secondary structure
.((((.(((..((((((((..((((...((.(((((((((((((((((((((.(((((((..(((.(((((...))))))))..)))))))..)))))))
)))).)))))))))).)))))).))))).))).))))))).....


SIMILARITIES
miRBase tcc-MIR156a: 4e-66

PMRD vvi-miR156a: 2e-27

microPC miR156: 0.000000000000008		UniProt no hits

RFAM mir-156: 3e-21		most similar mature miRNAs

Identical with: tcc-MIR156a from miRBase (MNEST041080)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;