miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST002748
species: Trifolium pratense
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Trifolium pratense Trifolium Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCATCGTCATCATCTTCATCA

miRNA*
 NNTGTGGATGTGGCGNTGAAG

mismatches: 3
bulges: 2
View larger
pre-miRNA
 TCATCTTCAAACTCTCCATCATCATCGTCATCATCTTCATCATCTCCTGCAGCCCGGGGGATCCACTAGTCTAGAGCGAGCCCCCCCTCGAGGTCGACGG
TATCGATAAGCTTGATATCGTTCAGAGGGGATTTTGCTTCCCTGATCAGACTGTCTAGTAGGCTTCTCCAGAGTTATGAGTGATGTTGACTCCCCATGAT
TTCTATCAGGTTGGATCTCCATCCATTTCTCCTTGTCCATCTCAGTTGTGTGTTAAGCAATTACCACAAGATTATGTGTTAACTTTTCAACTAAATCTTT
TAAAACATGACATTCTCCAACAACAGCCTTCTCTATGTCTGATTGGCATCCAAAGATCCAATTTCAGGGAAGATTTCAAACATGCAAGATCAAAATTTGA
GGAATTGAACCCACCATAGAAGCTTTTGAAATCGAAAGAATGAATCGGCGAGGATGCTTCACTGAGTGAGAAGCGCGNAAGAATAAAGGCNGCGGACAAT
TTCGAGTGATTTGTANGTGTGATGNNTGTGGATGTGGCGNTGAAGGAGAGATGGTGTGGTGGC

dot-bracket secondary structure
(((((.(((..((((((....(((.(((((.(((((.((.((((..((((.(((..(((((((((.((((((.(((((((...((((((......(((((
((((((.....)))))))))))..))))))..)))))))........))))))(((.(((((..((....((((((..........)))))).....)).
.))))).))).)))))))))....((((.((((((((.((.(((((((((((.(((....))).))).(((((((((.((((.................)
))).))))))...)))...)))))...((((((..((...((((((.(((....))))))))).)))))))).(((((((...((..........(((((
....)))))............)).)))))))((....)).))))).))))))))((((((.........)))))).....))))...))).))))(((..
..(((.....)))....)))))))..)).)))))))))).))).)))))).)))...))))).


SIMILARITIES
miRBase no hits

PMRD sbi-miR169d: 0.0001

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
Source sequences
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