miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Medicago sativa, Trifolium pratense, Medicago truncatula



ABOUT THIS RECORD

ID: MNEST002750
species: Trifolium pratense
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Trifolium pratense Trifolium Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GAATCCTCATCATCATCTTCC

miRNA*
 ATGATGATGATGATGATTCGA

mismatches: 3
bulges: 0
View larger
pre-miRNA
 TCTCCTCTCCAGAATCCTCATCATCATCTTCCTCTTCAACATCAACAGGAGCAACATGAAACCCATTCTCCTGATGGTTCAAGTTCACCCCATTCACTCC
TCCCCTCGAAGACTCTGTCACCTCCTCCTCCTCTCCTCCTCCTCCTCCTCCTCCCGTTCCAGGGAGAAGTCTCGATCCTCCTCCTATGATGGCATCAACG
GTGCTGGCGAGGAGAGAACCGGGTGCGGAATCGTACCTGGTAAGTCCCGTTTGTTGGCTGATGGAGCTCTGCTGTTGCTGAGAGGAAGAGGATGAAGAAG
AACCGGAAGACGAAGGAGGACGATACATGATGATGATGATGATGATTCGAGATTGAAT

dot-bracket secondary structure
((...((((..(((((.(((((((((((.((.(((((.........(((((.(((.((((..(((((.....))))))))).)))...........))))
)......)))))...(((....((.(((((((.((.((.(((((.((((.(((((......))))).))..((.((((((.((((....(((((...(((
((((.((((.(((....((((((((((....))))))))))...))))))).)).((((.....))))..))))))))))..)))).)))))))).)).)
)...))).)).))))))))).)).))).)).))))))))))).)))))))))..))..


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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