miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Actinidia chinensis, Actinidia deliciosa, Actinidia eriantha, Antirrhinum majus, Barnadesia spinosa, Cichorium intybus, Coffea canephora, Fraxinus excelsior, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Ipomoea batatas, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Panax ginseng, Parthenium argentatum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Taraxacum kok-saghyz, Taraxacum officinale, Triphysaria pusilla, Triphysaria versicolor, Zinnia violacea, Capsicum annuum, Carthamus tinctorius, Catharanthus roseus, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST002770
species: Triphysaria pusilla
miRNA family: MIRf21
source: miRNEST

Taxonomy by NCBI:
Triphysaria pusilla Triphysaria Rhinantheae Orobanchaceae Lamiales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGGAATCCTGATGATGCTGCT

miRNA*
 CGGCTTTATCATATGCCCTG

mismatches: 5
bulges: 1
View larger
pre-miRNA
 CAATTTTGTTGTGGTGTTGTTAATGATATCTGCGGAGGTTGTGGGAATCCTGATGATGCTGCTGCAGCATTGGCTAACAATCGACGGTCATGATTCATTT
GTTGCCACTGTTGTTGTTCTCCATTTCTTGACACGTCATCTCCTCCTCCCGGAAATTGATGACTTTGATAATTATGTGAGTTAAATGGTAGCCTGTTAAA
CATTTGAAGCATGTGGGGTTCATTTGTTTGCTTGACTTGTCCAAACCTATGTTGCTGCTGCATTTCATCTCTTCTTTCAGGCTGCCGGAAATTCAACTCA
GGTCTTAATCCTTGGCGTCTCCAATCACCACTAAATTGTGTTGAGAAAGAATTTCTTTGTTGTGAAGCTGAGTTTCCCAAACTTAGGTCCAAATTGTGGT
CTGATGATGATGCATTGTTTGAAGACTCTGCGGCTTTTAGTTCATCATCATAAATGGATGGATCAAAATTGGTAACAGCTTCCTTGCCATTACATTTTAT
GGCGGCTTTATCATATGCCCTGGCAGCTTCAACTTCAGTATCAAACAAACCCAAATAAACA

dot-bracket secondary structure
......((((.(((..(((((..(((((.(((..(((((((((((.....((((((.((((((((((((.((((.(((((..((..........))..))
))))))).))))))((((...........)))).((((((...(((....)))....))))))....((((..(((((((((...((((((((((.....
....((((..(((((((((.(((..(((((...((....)))))))..)))..))).))))))))))..........))))))))))..))))).(((.(
(((.......((((((.((..((((((.(((......))).))).(((((...))))).))).)).))))))........)))).)))(((.....))).
.(((((((((.(((..(((....)))..))).(((...))))))))))))..(((((..(((......(((....)))..)))...))))))))).))))
)))))).))))))....)))..)))))))).....)))))))))))))..)))....))))


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|P47927|AP2_ARATH: 2e-16

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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